Pharmacogenomics Tools
Browse all available pharmacogenomics tools.
Available tools
- Allele Call Confidence Margin Tool Compare caller-supplied research call confidence to an explicit boundary without phenotype or drug guidance.
- Allele Copy Count Record Label Label an explicitly supplied allele copy count without estimating copy number or phenotype.
- Allele Source Edition Gap Tool Calculate allele source edition gap from explicit caller-supplied inputs.
- Copy Number Reference Gap Tool Compare supplied nonclinical copy-number coordinates without inferring an allele or phenotype.
- Diplotype Separator Label Join explicitly supplied allele labels with an explicit unphased or phased separator without assigning a diplotype.
- Genotype Call Allele Count Tool Count supplied allele-call tokens without calling variants, assigning phase or predicting drug response.
- Genotype Panel Support Share Tool Count supplied locus-call and reference-matching support without phenotype or medication recommendations.
- Guideline Source Version Dategap Tool Compare supplied source-version tokens and resolved day indices without clinical guideline interpretation.
- Hgvs Intron Offset Closure Flag Tool Inspect one explicitly signed nonzero intronic offset fragment; not a full HGVS expression or variant validator.
- Pharmacogene Allele Frequency Sum Residual Tool Calculate pharmacogene allele frequency sum residual from explicit caller-supplied inputs.
- Pharmacogene Build Namespace Qualify an explicit gene label by assembly and annotation namespace without mapping coordinates.
- Pharmacogene Copy Number Token Field Tool Parse an explicit star-allele copy token; copies is zero when the copy number is unknown.
- Pharmacogene Diplotype Copyallocation Budget Tool Calculate pharmacogene diplotype copyallocation budget from explicit caller-supplied inputs.
- Pharmacogene Diplotype Order Canonicalizer Tool Order simple star alleles numerically while preserving suballele spellings.
- Pharmacogene Exon Intron Boundary Token Tool Parse an explicit exon/intron ordinal token without genomic boundary inference.
- Pharmacogene Haplotype Member Count Budget Tool Calculate pharmacogene haplotype member count budget from explicit caller-supplied inputs.
- Pharmacogene Hgvs Intronic Offset Sign Tool Parse a positive coding-position/intronic-offset subset without mapping it to a reference sequence.
- Pharmacogene Hgvs Stop Extension Token Tool Parse a Ter-style protein stop-extension syntax subset; unknown distance is represented explicitly.
- Pharmacogene Phase Unknown Token Tool Preserve the supplied phase-known flag without inferring haplotypes from labels.
- Pharmacogene Phenotype Caller Rule Match Tool Match supplied half-open phenotype-rule intervals without embedding clinical rules.
- Pharmacogene Reference Version Token Qualify an explicit pharmacogene reference by version without validating an allele or gene annotation.
- Pharmacogenomic Assay Covered Variant Check Tool Audit explicitly supplied assay-coverage IDs without predicting assay sensitivity.
- Pharmacogenomic Assembly Coordinate Source Pair Tool Compare supplied coordinate/reference metadata without liftover or sequence interpretation.
- Pharmacogenomic Call Uncertainty Marker Tool Separate an explicitly supplied uncertainty wrapper from an opaque call token.
- Pharmacogenomic No Call Token Preserve explicit no-call wording and its source without treating it as a genotype.
- Pharmacogenomic Result Activity Supplied Sum Tool Sum explicitly supplied allele-copy activities without choosing phenotype or treatment rules.
- Pharmacogenomic Sample Ploidy Mismatch Tool Calculate pharmacogenomic sample ploidy mismatch from explicit caller-supplied inputs.
- Pharmacogenomic Source Guideline ID Qualify an explicit guideline identifier by version without retrieving or applying treatment recommendations.
- Pharmacogenomic Test Method Label Preserve an explicit pharmacogenomic test-method label without inferring assay coverage or performance.
- Pharmacogenomic Variant Hgvs Prefix Token Tool Split a versioned HGVS accession prefix without validating the variant or reference sequence.
- Phase Block Missing Site Count Tool Count explicitly listed missing research phase-block sites without phasing or clinical variant interpretation.
- Reference Build Coordinate Offset Tool Apply a caller-verified local coordinate offset with explicit build labels; this is not a genome liftover algorithm.
- Research Haplotype Phase Block Span Tool Measure supplied research phase-block coordinates while preserving unknown-block status; no haplotype inference.
- Star Allele Copy Budget Remainder Tool Audit caller-supplied allele labels and copy counts without allele calling, phenotype inference or dosing guidance.
- Star Allele Diplotype Phase Separator Tool Split a simple two-star-allele diplotype subset without inferring haplotypes or function.
- Star Allele Token Parser Split a supplied numeric star-allele label into its number and optional suballele text without recognizing an allele definition.
- Variant Phasing Status Label Label explicitly recorded variant phasing status without inferring phase or clinical implications.