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PD Reference Compound Tag

Tag an explicit assay reference-compound record without asserting identity or equivalence.

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Description

Tag an explicit assay reference-compound record.

Assay records separate concentration/effect units, control references, censoring and model parameters. An occupied/free complement assumes one common exhaustive total, while a control ratio is not automatically a percentage effect. Labels and local scalar operations do not fit a response model or establish potency, drug efficacy or an appropriate medication choice.

Tag an explicit assay reference-compound record.

When to use this tool

Use PD Reference Compound Tag when you already have assayId, referenceCompoundId, source and need to tag an explicit assay reference-compound record.

How to use the tool and how it works

  1. Enter assayId, referenceCompoundId, source. Use the units and conventions below.
  2. Run the tool. Correct any format, range, or cross-field input error before interpreting the output.
  3. Read token. Use the output convention below.

Enter assayId, referenceCompoundId, source using the field constraints below. Encode these values, in exactly that order, as a JSON array and return the serialized array as text in token. String values are preserved without trimming or external terminology lookup.1

Input fieldMeaning and unitsAccepted input
assayIdAssay IdRequired. Text; minimum UTF-16 length 1; maximum UTF-16 length 8192.
referenceCompoundIdReference Compound IdRequired. Text; minimum UTF-16 length 1; maximum UTF-16 length 8192.
sourceSourceRequired. Text; minimum UTF-16 length 1; maximum UTF-16 length 8192.
Output fieldInterpretationReturned shape
tokenTokenRequired. Text; maximum UTF-16 length 8192.
json
{
  "input": {
    "assayId": "A17",
    "referenceCompoundId": "CMP2",
    "source": "Protocol v2"
  },
  "output": {
    "token": "[\"A17\",\"CMP2\",\"Protocol v2\"]"
  }
}

Limitations and assumptions

  • The result records supplied values without asserting identity or equivalence. Sources and asserted relationships are not independently authenticated.
  • Inputs must satisfy both the field types and the cross-field conditions above. Invalid input causes an error; a successful false flag or documented placeholder is a different result.

Alternative or Complementary methods

Use the full assay controls, measurement units and response-model definition when estimating an effect. Fit or evaluate the intended concentration-response relationship explicitly; a control ratio, complement or parameter label does not infer that relationship.

References

  1. Calculation and input contract: pharmacodynamics/pd-reference-compound-tag — tool.io

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