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Embryo Stage Order Gap Tool

Compare supplied research stage labels against a caller-specified ordering without species-specific staging inference.

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Description

Return signed index gap in a supplied developmental stage order.

Developmental stages and lineages can be represented by labels, ordered events and observation intervals. Index and time differences preserve a declared representation but do not discover lineage, assign stage or establish biological equivalence.

Return signed index gap in a supplied developmental stage order.

When to use this tool

Use Embryo Stage Order Gap when checking an explicit stage, lineage or observation-coordinate convention.

How to use the tool and how it works

  1. Enter firstStage, secondStage, suppliedStageOrder. Use the units and conventions below.
  2. Run the tool. Correct any format, range, or cross-field input error before interpreting the output.
  3. Read indexGap, sameStage. Inspect sameStage before interpreting the associated values.

Return signed index gap in a supplied developmental stage order. Require unique stage labels and both requested stages present; indexGap = second index-first index and sameStage tests equality.1

Input fieldMeaning and unitsAccepted input
firstStageFirst StageRequired. Text; maximum UTF-16 length 8192.
secondStageSecond StageRequired. Text; maximum UTF-16 length 8192.
suppliedStageOrderSupplied Stage OrderRequired. Array of text; maximum UTF-16 length 8192; maximum items 256.
Output fieldInterpretationReturned shape
indexGapIndex GapRequired. Safe integer.
sameStageSame StageRequired. Boolean.
json
{
  "input": {
    "firstStage": "stage-A",
    "secondStage": "stage-C",
    "suppliedStageOrder": [
      "stage-A",
      "stage-B",
      "stage-C"
    ]
  },
  "output": {
    "indexGap": 2,
    "sameStage": false
  }
}

Limitations and assumptions

  • Ordinal stage steps are not equal elapsed time or biological distance.
  • Inputs must satisfy both the field types and the cross-field conditions above. Invalid input causes an error; a successful false flag or documented placeholder is a different result.

Alternative or Complementary methods

Review the original biological evidence and its staging or lineage model before drawing mechanistic conclusions.

References

  1. Calculation and input contract: developmental-biology/embryo-stage-order-gap — tool.io

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