Band Intensity Ratio

Normalise a western blot target band by dividing its densitometry intensity by the loading control intensity of the same lane.

Description

Normalise a western blot target band by dividing its densitometry intensity by the loading control intensity of the same lane.

Band Intensity Ratio is a focused biology tool that normalise a western blot target band by dividing its densitometry intensity by the loading control intensity of the same lane. It calculates locally from the values you enter and exposes the result without changing the source observations.1

When to use Band Intensity Ratio

Use Band Intensity Ratio when you need to normalise a western blot target band by dividing its densitometry intensity by the loading control intensity of the same lane. Enter Target band intensity and Loading control intensity using the definitions and units below so the result can be reproduced.

Target band intensity
Densitometry intensity of the target protein band; must not be negative.
Loading control intensity
Densitometry intensity of the loading control band; must be greater than zero.

How Band Intensity Ratio calculates the result

The published tool contract uses this rule: Normalise a western blot target band by dividing its densitometry intensity by the loading control intensity of the same lane.

Normalized ratio
Target band intensity normalised to the loading control.

Limitations of Band Intensity Ratio

A ratio or percentage can conceal the scale of its numerator and denominator and becomes sensitive to measurement error when the denominator is small.

Alternative or Complementary measurements

Retain the original Target band intensity and Loading control intensity values and their units alongside the result. Two-Band EVI is useful when you instead need to compute the two-band Enhanced Vegetation Index as 2.5 * (NIR - red) / (NIR + 2.4 * red + 1) from reflectances between zero and one, rejecting degenerate reflectances that zero the denominator. APTT Ratio provides another view by helping you compute the activated partial thromboplastin time ratio as the patient APTT divided by the control APTT.

References

  1. Western blot normalization — Wikipedia contributors

Similar or alternative tools

  • Two-Band EVI

    Compute the two-band Enhanced Vegetation Index as 2.5 * (NIR - red) / (NIR + 2.4 * red + 1) from reflectances between zero and one, rejecting degenerate reflectances that zero the denominator.

  • APTT Ratio

    Compute the activated partial thromboplastin time ratio as the patient APTT divided by the control APTT.

  • Gibbs-Donnan Ratio

    Compute the Gibbs-Donnan ratio as the concentration of permeant ion inside a cell divided by its concentration outside.

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