Jaccard Index

Compute the Jaccard similarity index between two species counts.

Description

Compute the Jaccard similarity index between two species counts.

Jaccard Index is a focused biology tool that compute the Jaccard similarity index between two species counts. It calculates locally from the values you enter and exposes the result without changing the source observations.1

When to use Jaccard Index

Use Jaccard Index when you need to compute the Jaccard similarity index between two species counts. Enter Species in community A, Species in community B, and Shared species using the definitions and units below so the result can be reproduced.

Species in community A
An integer count or setting greater than or equal to 0.
Species in community B
An integer count or setting greater than or equal to 0.
Shared species
An integer count or setting greater than or equal to 0.

How Jaccard Index calculates the result

The published tool contract uses this rule: Compute the Jaccard similarity index between two species counts.

Jaccard index
The calculated jaccard index.

Limitations of Jaccard Index

The calculation does not propagate measurement uncertainty, sampling error, or biological and chemical variability.

Alternative or Complementary measurements

Retain the original Species in community A, Species in community B, and Shared species values and their units alongside the result. Sorensen Index is useful when you instead need to compute the Sorensen-Dice coefficient of community similarity as 2 times the number of shared species divided by the sum of species counts in both communities. Morisita-Horn Counts provides another view by helping you quantify overlap between two communities over two species from raw abundance counts with the Morisita-Horn index.

References

  1. Jaccard index — Wikipedia contributors

Similar or alternative tools

  • Sorensen Index

    Compute the Sorensen-Dice coefficient of community similarity as 2 times the number of shared species divided by the sum of species counts in both communities.

  • Morisita-Horn Counts

    Quantify overlap between two communities over two species from raw abundance counts with the Morisita-Horn index.

  • Brillouin Index

    Compute the Brillouin diversity index HB = (ln(N!) - sum(ln(ni!))) / N from three species counts using loop-based log factorials for communities up to 10000 individuals.

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